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Using promoter inspector software, we failed detecting binding sites for STRA13 or CLOCK/BMAL1 in the two rae-1 promoters.
This region overlapped with the SLIT1 putative promoter region predicted by Promoter Inspector software (http://www.genomatrix.de).de
The SLIT3 putative promoter region was predicted by Promoter Inspector software (http://www.genomatrix.de).de
CpG islands were identified on the human genome browser and putative promoter regions were predicted by Promoter Inspector software (Genomatix, www.genomatix.de).de
All genes analysed had a 5′ CpG island (as identified by the human genome browser (http://genome.ucsc.edu/)) and promoter regions were predicted by Genomatix promoter inspector software (http://www.genomatix.de/).de/
Given the size of the resultant files, and to make sure that the sampled chains were stable, we discarded the first 80 million generations of each run (burn-in), which was more than enough according to what the chain inspector software Tracer v1.4 [ 51] suggested.
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This observation was consistent with the presence of a putative ATF6 site (position -100/-79 respectheo the ATG) in the promoter of the EPM2B gene (determined by using the Mat Inspector 7.4 software).
Samples were averaged across technical and biological replicates, and subtracted across experimental groups within the Gene Expression Dynamics Inspector (GEDI) software.
In order to understand how PCGs and miRNAs expression patterns correlate with hematopoietic cell differentiation, both genome and miRNAs expression profiles were analyzed as global patterns by using the Gene Expression Dynamics Inspector (GEDI) software [ 24].
Among them, we applied CT imaging analysis on 10 SUBJECTS, 21 EMPHYSEMA and 16 CONTROLS whose CT conditions were available to apply imaging analysis software (Airway Inspector, Brigham and Women's Hospital, Boston, MA) [ 8].
Download the software PC Inspector Clonemaxx; it is a free download of only 750KB.
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