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Genome browsers have been shown as one kind of useful tools in inspecting sequence structures and locations in a direct and visualized way - thus we set up and configured two different browsers, GBrowse [ 21] and JBrowse (Additional File 2) [ 22], catering to users' different requirements.
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The remaining tRNA genes were identified by inspecting sequences for tRNA-like secondary structures and anticodons.
The remaining tRNA genes were found by inspecting sequences for tRNA-like secondary structures and anticodons.
Remaining tRNA genes were identified by inspecting sequences for tRNA-like secondary structures and anticodons.
Over a total length of 879,457 bp inspected sequence, 170 differences were found, thereof 39 single base exchanges and 131 single base insertions/deletions.
On the other hand, as genomic research deepens, there is an increasing need for the capacity to reprocess EST traces in order to inspect sequence features that have previously been ignored (e.g., 3' and/or 5' termini) and detect new features that have potential biological meaning.
As HTP sequencing technology can be difficult to access and expensive to use, a method to inspect sequencing library quality and genomic enrichment for ChIP-seq experiments in advance of deep sequencing would be of substantial utility to a wide number of researchers [14].
Additional polymorphisms due to sequencing errors could be identified by inspecting raw sequence data.
Inspecting the sequence of the cab12 promoter for the ACGT core sequence of bZIP factor binding sites reveals 12 positions for this motif (data not shown).
When inspecting a sequence assembly, one of the first features to assess is whether the consensus sequence is in a single piece or multiple pieces (i.e., contigs).
Methylation rates were estimated by inspecting read sequence and recording the location of CpGs relative to the reference genome.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com