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In the second part of our study, we compared the newly discovered putative regions to those sites previously postulated in the literature, using methods based on inspecting patterns of linkage disequilibrium, population divergence and other methodologies.
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We inspect patterns of book adoption by modeling graphs of book spreading in time and comparing them with null models to point out their clustered and expanding nature.
We also inspected the patterns of responses using graphical techniques.
We inspected the patterns of epigenetic remodeling to discover which of the assayed marks most uniquely identify the EMT clusters.
To inspect overall patterns of genetic differentiation between the RG and FR populations, we calculated F ST [abbreviated here as F; see Eq. (1) in Materials and Methods], as defined by Weir and Cockerham (1984), using the estimator of Hudson et al. (1992).
We checked for this by inspecting the pattern of residuals, and corrected for it when necessary by weighting the regression analysis by 1/Ct2, as recommended [59].
Using the visual inspecting metabolic patterns of steroids and the coincidences between RY and QY, the pre- and post-menopausal women, and male groups with PTC were clustered individually (Additional file 1A).
Further we inspected the pattern of intron positions for those genes containing introns.
It can be used for visualization of regions with low p-values to inspect the pattern of variation across linked SNPs and also at different stages of disease (e.g., HIV infection, AIDS progression and treatment outcome).
While inspecting global localization patterns of YY1 binding motifs in each genome, we noticed that clusters of YY1 binding motifs are co-localized with the genomic regions harboring olfactory receptor (OLFR) genes.
Anybody seeking a further cause for alarm should inspect the voting patterns of June 23rd.
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