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These alignments were visually inspected to search for any indels in a conserved region that was uniquely present in C. tepidum (the only Chlorobi species present in these groups).
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Despite our best efforts to develop a method of providing real-time feedback about the search process (i.e., which areas have and have not been inspected) to improve rare target search, we conclude that these EMF manipulations, as we have implemented them here, are unlikely to improve rare target search performance and may even hinder it.
The expected values (E-values) of different hits from these searches were inspected to identify putative ε-proteobacteria-specific proteins [ 38, 40].
Results of the BLAST searches were inspected to identify proteins where either all of the observed hits were from other chlamydial species, or where all hits showing significant homology to the query protein (see Methods section) were members of the Chlamydiales.
In addition, MS/MS spectra of major precursor ions unidentified by the Mascot search were manually inspected to assign amino acid sequences.
All observations delivered by the different searches were manually inspected to infer functional annotations for the predicted proteins.
The sorted.bam file was loaded into the IGV v2.3 software [ 33] and mapping in the region with the MELO3C004235 to MELO3C004331 genes was inspected in detail to search for discrepancies between the reference sequence and the aligned reads.
Public health officials may, on occasion, wish to inspect the line lists to search for specific diagnoses that do not occur frequently enough to trigger an alert for their syndrome, but may be meaningful in the context of information that arises from other sources.
"Forces moved to search and inspect in Palestine Street, but were fired on by armed men who tried to intercept them, resulting in the martyrdom of a soldier and the wounding of three others," the unidentified security official explained, according to AFP.
The obvious approach was to search for errors by inspecting each invoice using internal data sources that estimated each invoice.
To search for evidence to the contrary, we inspected QSOX intron positions through various taxa.
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