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At first, based on the inspected database, a three-dimensional finite element analysis was performed by using Abaqus code to analyse the stress distribution and calculate J-integral values of a crack tip through direct definition and stress intensity factor.
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We have also inspected the database (named RANDOM database) described recently by Fjell et al. [19] that contents a set of 189 peptides randomly synthesized and experimentally tested, again in uniform conditions.
All the search results were manually inspected and database matches that exceed 99% identity over the length of the aligned region were reported as possible species matches.
Data was processed using the InsPecT database search algorithm and the spectra were manually inspected for validation (see flow diagram Figure 3).
These were classified into different indications by manually inspecting all database entries (we define indication as a certain symptom which could be treated by the compound rather than the binding of the compound to a certain target).
To address this, a second resource, the NCBI GEO database, was inspected for informative microarray studies.
Every peptide, and not just the ones that deviate from the consensus of a database, is inspected using the ED maps.
All BLAST outputs were inspected by the same database curator, in order to identify the specific intron or exon involved in each fusion.
For complete analysis of the database, we inspected the phylogenetic distribution of protein families across model organisms (please see additional file 4).
The single-fiber-resolved proteomes for the first time afford a global view of the fiber type distribution of contractile and cytoskeletal protein isoforms and can be inspected in the MaxQB database [ 25].
Database can be inspected via four different HTML pages to allow distinctive queries.
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