Exact(2)
For example, an insertion call would not be considered valid if the variant with the same coordinate in the validation data was instead a deletion.
We report Sanger sequencing results for 343 polymorphic Alu MEI events from the 1000 Genomes Pilot Project, 309 of the 611 intergenic insertion events representing each of the four insertion call sets (P1/RP, P1/SR, P2/RP and P2/SR), as well as all 34 validated Alu elements from exon-targeted regions which resided primarily within intronic and UTR-overlap regions (see Materials and Methods).
Similar(6)
MAP kinases share a common sequence insertion called "MAP kinase insert", which, for ERK2, has been shown to interact with regulatory proteins and, for p38α, has been proposed to be involved in the regulation of catalytic activity.
Exact breakpoint resolution of zero reference-span events can be complicated by genomic repeats and microhomology of the inserted sequence, resulting in non-overlapping insertion calls of the same event.
We propose two variations of an incremental static scheduling scheme: one based on the steepest descent insertion, called OR1, and the other, on multistage rescheduling, called OR2.
Moreover, the proximal and anterior part of the native ACL insertion (called anteromedial fibers) is the most isometric location (Simmons et al., 2003), these fibers are subjected to small elongations during flexion extension of the knee and thus correspond to a placement with low tension applied on the graft.
There was one false positive insertion called at u =1.
For TE insertion calling, we used genomic DNA-seq reads (single-end, 100bp) from OSCs.
Related(2)
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