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Hence, a P-element insertion at the same location as that in tub does not by itself have an effect on tube expression.
The fungal KDM1 proteins also have an insertion at the same position, but the sequences are not similar to the animal insertions.
However, this event is basically identical to a process assuming first a gene deletion followed by an insertion at the same place.
We also noted that the RD sequence of the tunicate Oikopleura dioica (AAS21356 in GenBank) has an insertion at the same position (of two amino acids, a proline and an isoleucine).
J39 is a merger of the two ORFs with a 316 base pair insertion at the same location derived from a BG from Paenibacillus sp. JDR-2 (ACto0588.1), to repair the glycoside hydrolase family 3 N-terminal domain.
Wolters et al. [ 12] detected a smaller columnar-specific insertion at the same position, which is the solo-LTR of Gypsy-44 and thus most likely represents an artefact (unpublished data).
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Two unrelated large insertions at the same position within the promoter are segregating at low frequencies; one is a strong ectodermal repressor that contains 16 verified transcription-factor-binding sites.
Likewise, retro-insertion (at the same locus) by homologous recombination of mature (spliced) mRNA may account for intron loss.
Also, RetroSeq can predict several insertions at the same site but with different predicted elements, and these were merged to a non-redundant set.
The probability of independent insertions at the same locus is exceedingly low, which links SINE-containing loci as related by descent [ 16, 17].
These differences between Ty families were presented by plotting the number of insertions against the number of strains showing these same insertions at the same locus, normalized by the total number of insertions observed in the whole Ty family.
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