Exact(14)
Input variants within dispensable genes could also be annotated to ease decision making.
Therefore, reference sequence position information was corrected from the selected input variants data.
The merged events of all input variants are read from the RsMergeArch dataset at first.
Finally, input variants not existing in the SNPChrPosOnRef dataset but in the SNPHistory dataset are marked as being deleted.
At the end of the data preparation procedure, SNPTracker reads the SNPChrPosOnRef dataset to retrieve coordinates for all input variants.
Alternatively, one of the HGVS-approved methods can be used to input variants, or the variant can be designated with the genomic coordinate (g).
Similar(46)
all.vin contains the input variant file.
Next, we train an SVM for SNPs and indels and for each input variant caller separately.
After preparing the effective data, SNPTracker then goes through every input variant to update its rs ID and coordinate.
To minimize and potentially avoid this problem, the union of all variants called within the pedigree is used as the initial input variant set.
Although the output created by this tool is now valid, if the user has selected the wrong presumed input variant, it is possible for the resultant score values not to reflect the values intended by the sequencing technology.
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