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We used GATHER [ 31, 32] to input the lists of 83 upregulated and 32 downregulated probe identifiers and generate annotations for gene ontology categories, KEGG pathways, protein binding partners and transcription factor binding sites.
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Most of the approaches for self-adaptive systems implement a reconfiguration service that receives as input the list of all possible configurations and the plans to switch between them.
Users need to simply select the organism (human or mouse), the microarray platform (currently limited to Affymetrix), and input the list of genes by typing or pasting either gene symbols or Entrez Gene IDs.
We input the list of annotated putative orthologs as a customized annotated reference and the list of orthologs with specific similarity as a customized annotation.
For a gene-based analysis, the system takes as input the list of identifiers (ID) of the genes to be analyzed.
Readers who prefer to use the UMLS extraction tool can input the list of Category 0 vocabularies provided herein, bypassing the GOODCUI.PL Perl script [see Additional file 1].
Based on the co-expression network between lincRNAs acting as miRNA targets and mRNAs, we used the AgriGO toolkit and input the list of mRNA genes to predict the function of these lincRNAs [ 66].
Many crossword puzzle creators automatically lay the words out for you; all you do is specify puzzle size and input the list of words and clues.
Annotation results were obtained by inputting the list of gene symbol as identifier [ 18].
Annotation results were obtained by inputting the list of gene symbol as identifier.
The results were obtained by inputting the list of gene symbol as identifier (organism = sus scrofa, combined score = 0.15).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com