Sentence examples for input reads for from inspiring English sources

To accumulate information, all reconstructed transcripts are used as input reads for the next iteration.

In pipeline 4 we used TriageTools [ 25] (v0.2.0), a tool that efficiently screens input reads for similarity to a specific target sequence.

Resulting contigs from Velvet were treated as input reads for downstream assembly with Celera Assembler (Myers et al., 2000) version 6.1, to produce 356a draft assembly.

During each iteration, an accumulated de Bruijn graph H k for a fixed k is constructed from the input reads and the contigs constructed in previous iterations, i.e. those contigs constructed in H k- s are treated as input reads for the construction of H k. The depth information is used to separate de Bruijn graph into components.

For Trinity, we used the same input reads as for Velvet-Oases.

To determine the amount of input reads needed for sufficient transcriptome coverage, a simulation test was performed on the UNC data.

Separating the binding sites by the corresponding transcription factor, input reads were high for almost all of the factors.

The reference genomes chosen for aligning the input reads are NC001475 (NCBI accession number) for Dengue, NC009942 for West Nile, and a modified version of the HXB2 reference K03455 for HIV.

Input reads can be derived from, for example, raw long-read sequencing data or contigs and scaffolds coming from plant genome projects.

This measure is independent of the total number of input reads and can be used for an unbiased comparison between different samples.

For the mapping arm, input reads are dereplicated and digitally normalized18 using default parameters.