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The two combined gene lists for up- and down regulated genes were also used as input for functional annotation with DAVID as described above.
Then, the obtained data were filtered to be used as input for functional analysis carried out using DAVID.
Gene symbols were used as input for functional association network creation using the STRING database [ 36], Cognoscente [ 37], and GeneMANIA [ 38] online tools.
A) The list of differentially regulated on microarray (n = 418) and Ensembl reannotated genes was used as an input for functional annotation clustering; B) Subset of these genes (n = 28; List eQG from [ 18]) was used as an input.
For the ROH on CFA 26 Ensembl IDs of the annotated elements in the syntenic region at Hs 12 108,311,620-133,784,108 bp were retrieved using Biomart [ 29] and used as input for functional annotation analysis.
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Therefore, the human orthologs of transcripts with significant differential expression were used as input identifiers for functional annotation clustering in DAVID.
The alignment and the neighborjoining tree were used as input for the functional divergence analyses.
We compared counts for the single-oocyte samples with those for the 5-oocyte and 3-oocyte samples and found that counts increased in relation to sample input for the functional genes (Supplemental Table 1).
In this paper, an adequate set of input features is selected for functional expansion genetically for the purpose of solving the problem of classification in data mining using functional link neural network.
This paper describes an upper bound on the maximin distance criterion for functional inputs.
Local topographies in convergent inputs create distinct conditions for functional processing and it is, thus, not surprising to see topographic principles expressed by essentially all considered functional aspects in AAF.
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