Differentially expressed gene lists from brain tissue datasets: App-Ps1 and control frontal cortex, rTg4510 and control brain tissue, aging brain tissue, ME7 inoculation hippocampus with and without LPS and ME7 and mock inoculation on different time points were used as input for userlistenrichment function.
Therefore, edges represent the work flow/information flow when creating mappings and the resulting data are used again as input for a mapping function.
The list of available mapping functions (see Tab at the right side of Fig. 4) is also color coded according to the type of measurements, which are needed as input for the mapping functions.
Third, the number of blood samples for input function used for integration plot analysis can be a factor that causes different results in calculated transfer rates.
The new pairs are then clustered according to their keys and provided as the input for the reduce function in the reduce phase.
The consensus sequence was used as the input for the Divergence function of MAK.
First, we used a seed ME as input for the simulateModule function from the R package WGCNA [ 34].
Uniquely mapped reads were used as input for the mpileup function of SAMtools v0.1.18 [ 25, 63] for initial identification of polymorphic loci.
Gnome sequence was used as the input for the Anchor function of MAK to retrieve longer elements bearing similar terminal sequences and Tc1/mariner-like transposase coding sequences.
For example, a shared circuit may require neuromodulatory input for its normal function, but be sexually differentiated in its intrinsic excitability or synaptic partner choice, leaving the neuromodulatory input essentially unchanged.
A matrix of copy number probabilities obtained from other algorithms can be used as input for the cnv function to create a cnv class object, which can then be used to perform association analysis.
