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The following modules are responsible for the creation of the input dataset from which the event representations are created in the following step.
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NTP can take vectors of the mean and sample standard deviation provided separately from input dataset for the standardization (supported in the R code packaged in the GenePattern NTP module).
IPA will associate genes from the input dataset for different functional categories and calculate a p-value using the right-tailed Fisher's exact test to assess the statistical significance of the enriched genes for a functional category in relation to the initial input dataset and the total number of genes in the database involved in the function.
The input dataset for OrthoMCL consisted of 325,188 protein sequences from 22 proteomes.
Thus, while there is variability in the networks found based on the input dataset just from resampling, TL-BSLA is capable of consistently picking out a core of true positive connections.
The input datasets for three of these strains came from the Broad Institute database; while the remaining three came from the supplementary material of [ 16].
The main novelties introduced in the SIRMPol model are: (1) an extension of the Rome ionosonde input dataset that, besides data from 1957 to 1987, includes also data from 1988 to 2007; (2) the use of second order polynomial regressions, instead of linear ones, to fit the relation foF2 vs.
The decision system generates a decision tree from input dataset and provides a reliable classification tool.
Using the Network Explorer function in Ingenuity Pathway Analysis (IPA v8.5), the most significantly populated gene networks for a specific geneset were calculated based on the percentage population (by network eligible focus molecules from input dataset), mediated by the gene identities of the input datasets, of the resultant gene networks.
Besides, existing trajectory merging method has to remove some trajectories from the input dataset.
Elemental data is extracted from the input dataset in XL format, using the two optional configuration files if necessary.
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