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Input: backbone topology G = (V',E), link rates rjk|jk∈E, and IGW.
We wish to find a compact representative set of possibly overlapping fragments of the input backbone curve, such that similar structures are cut in a similar way, thus likely to share some fragments.
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Backbone dihedral angles were generated with TALOS + by inputting backbone H, N and C chemical shifts.
Uric acid formation requires the use of a glycine carbon backbone, the input of carbon from both carbon dioxide and formate, the inclusion of nitrogen from the transamination of glutamine to glutamate and the input of energy.
Input: the set of scheduled backbone links L B. Output: the backbone residual capacity Ĉ r. // Ĉ j k r : the residual capacity of link l jk.
In fact, it has been shown that finding the optimal solution, the Global Minimum Energy Conformation (GMEC), for a given input model with a rigid backbone, a rotamer library and a pairwise energy function, is NP-hard (Chazelle et al., 2004; Pierce and Winfree, 2002).
The predictor uses the outputs of these two methods as inputs to further improve the backbone dynamics predictions and take advantage of the strengths of both of FRAGFOLD-IDP and DynaMine.
When using ideal backbones as the input for the C2A method, finding combinations of matches free of major collisions took an average of 47 ± 30 s, with the maximum being 117 s.
The newer chemical shift evaluation method of Camilloni et al. identifies secondary structure by using all available backbone chemical shifts as input parameters.
The MGA has statistical models of prophage genes and can automatically detect them in addition to chromosome backbone genes even when input genomic sequences have mosaic structures attributed to lateral gene transfers and/or phage infections.
Intra- and inter-molecular NOE restraints, H-N RDCs, and all chemical shifts including the backbone and side-chain were input into RosettaOligomer for the final determination of the WT-ACD dimer structure.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com