Exact(7)
Curve OA is defined as the initial backbone curve, which characterizes stress strain behaviour.
The resulting electron density map was used for manual building of an initial backbone model.
The initial backbone that is the diameter of the MST of randomly selected bright pixels is shown in yellow.
An initial backbone model of SeCitS was created for phasing of the native high-resolution data by molecular replacement with PHASER (McCoy et al., 2007).
The initial backbone conformation and Cβ position was used as a starting point for each alternate; ideal geometry rotamers were subsequently introduced by B RDEE.
Figure 2 shows the comparison of the initial backbone, and the results with various combinations of energy terms included in the total energy.
Similar(53)
In order to construct an initial scaffold backbone, reads were first obtained using a 454 Roche genome sequencer FLX Titanium instrument employing a long-tag, paired-end library (average read length of 400 bp).
Further, side-chain torsion angles are assigned to the initial structure using backbone dependent rotamer library [ 51].
To monitor the conformational changes during the simulations, the root mean squared deviation (RMSD) between the initial coordinates of the backbone atoms of the proteins and the coordinates along the MD simulations was computed for every snapshot.
To evaluate the overall stability of these models, we calculated the RMSD from the initial structure of all backbone Cα atoms as a function of simulation time, as shown in Figure 2A.
Our initial experiments examined the backbone dynamics of 10 0-, 14 0-, and 18 0-ACP.
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