Sentence examples for information of pathway from inspiring English sources
Detailed information of pathway analysis is included in Additional file 6: Table S6.
Furthermore, a number of interactions may encode redundant information of pathway structure (Carter 2013), further overestimating the explained variance.
Finally, PID also contains information of pathway cross-talks which can be used as positive data for evaluating the performance of different methods.
Recently, some topological methods to parse the internal information of pathway (e.g., signaling pathway impact analysis (SPIA) [20] and CliPPER [21]) have also been developed.
The new method naturally deduced the shortest heuristic [ 5] but did not require the prior information of pathway structure or pathway length.
Another tool for the in silico investigation of interactions is pathway enrichment analysis, which annotates molecules of interest, e.g. differentially expressed genes, to cellular pathways based on over-representation using the information of pathway databases, such as Reactome [ 14].
The information of pathways that yeast proteins participate in is retrieved from Kyoto Encyclopedia of Genes and Genomes [44] (KEGG).
A number of techniques and tools have recently emerged, aimed at determining pathway activities based on topological information of pathways and gene expression/protein activity levels.
The information of pathways and associated KO were retrieved from KEGG web sites, and the candidate genes were grouped into KEGG pathways accordingly.
By examining the topological feature of a sub-network functional module, we can extract information of pathways functioning in Budd Chiari syndrome.
To explore the functional pathways, regulatory gene networks, and/or related gene groups coding for Xenopus tropicalis bHLH proteins, the identified bHLH genes were put into the databases KOBAS and STRING to get the signaling information of pathways and protein interaction networks according to available public databases and known protein interactions.
