Exact(3)
To investigate the relationship between the number of putative SNPs and SNP mining parameters, SNPs were mined under different parameter settings regarding the minimal available sequence information flanking the target SNP (1, 2, 3, 4, 6 or 12 bases), and the minimal interval of flanking sequence that must be devoid of additional SNPs (1, 2, 3, 4, 6 or 12 bases).
The SNP list provides allele information, flanking sequences (for assay development and strand verification, etc) and links for validation information and source databases.
The motif logo of the extended cCTCF/cCohesin sites (30 bp at each side) showed information flanking the 16-bp core CTCF motif (data not shown), indicative of the existence of additional motifs.
Similar(57)
In some cases, we have used two different versions of the same matrix, one with low-information flanking nucleotides removed; the short version is referred to as "crop" or "trim" and an "a" is appended to the identifier.
In this study, we show that an approximate estimation of the CNV mutation rate could be achieved by using the phylogeny information of flanking SNPs.
Information on flanking sequences obtained is summarized in Table S7.
Where possible, gaps in the map were filled using information from flanking markers.
In 2005, rice genome sequence has completely become available and the physical positions of numerous QTL could be determined based on the sequence information of flanking markers.
The potential genotyping errors and missing genotypes were inferred by using information from flanking marker data with the initial marker order.
Imputation was performed at each marker using information from flanking markers, both called and missing, to define the haplotype allele that each individual carried.
The imputation algorithm that was performed at each marker uses information from flanking markers (that are called or missing) and defines the haplotype allele that each individual carries.
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