We used these partial known patterns with the regulatory networks inferred above to predict the expression patterns of all the genes, including unverified patterns.
In Figure 4a, we observe that the expression patterns inferred for the linear model across all HaCaT samples (baseline), all serum treated samples in HaCaT, and all HaCaT-HRASVal12D samples are most similar to the corresponding CoGAPS patterns.
Interestingly, the early over-expression of DQ198153 transcript in the Moro is corroborated by the expression patterns inferred when considering the EST-based tissue/organ distribution, as reported in the section ' In silico identification and characterization of C. sinensis GST transcripts'.
To infer the differential expression patterns of genes underlying a robust SW-associated major QTL interval, suitable gene-specific primer pairs were designed for expression profiling.
Additionally, commonalities between cancer types can be inferred; for example, the expression pattern found in lung cancer is highly similar to the one in colorectal, ovarian and breast cancer, in particular for the upregulated genes.
This work examined the expression patterns of co-expressed gene pairs or 'doublets' across multiple data sets to infer functional linkages.
In an attempt to infer potential tissue functions for previously uncharacterized genes, we investigate the expression patterns, functional annotations and cDNA sequences of a gene cluster.
The RNA sequencing results are therefore supported by the RNA in situ results reported by Chung et al. (2009), but the differences in the expression patterns suggest that care must be exercised when inferring precise expression patterns from either of the two data sets.
However, the expression patterns were different.
From the data obtained using these six species, we inferred the genus expression pattern for each gene family (supplementary table 2, Supplementary Material online), which we defined as the pattern observed for the majority of the species that we examined, including at least D. mojavensis or D. virilis for old families.
