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To assess the impact of sequence alignment, RAxML trees were also inferred under the same settings from the other alignments, an approach known as multiple analysis [64], [65]; for details, see supporting file S3.
Our CVTree provides such a proper support because all of the relationships therein are inferred under the same criteria.
Similar(58)
ML trees were inferred under the HKY model.
Moreover, we also observed that the t distributions inferred under the PL model are tighter compared to those inferred under the aggregated-node calibration scheme.
The t values inferred under the FV-host co-speciation assumption were used as references.
Topologies were inferred under the Maximum Likelihood (ML) and Bayesian Inference (BI) approaches.
Modern and ancestral effective population sizes were also inferred for the same 20-locus autosomal dataset under the isolation-with-migration model implemented by Jody Hey and colleagues [23].
EFL phylogenies were inferred using the same models used for EF-1α.
The neighbour-joining split network was inferred from the same alignment using SplitsTree4 [ 64].
But he refuses in the absence of firm evidence to infer that the same thing happened at national level under the Conservatives.
They implicitly inferred the same.
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