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Notably, the structural information is not required a priori but can be inferred, in parallel to the alignment process, based on an RNA free energy model.
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Gains and losses of introns were inferred in a weighted (Dollo) parsimony framework, considering parallel losses much more frequent than parallel gains [ 60], as in [ 27].
Our contention that (interpersonal) preferences should be the object of inference parallels Hohwy's hypothesis that desires are inferred in the process of applying generative models of ourselves (Hohwy, 2007).
Additional expansions of amino acid transporters detected in A. pisum and P. citri that are independent of the expansion inferred in the MRCA of Sternorrhyncha are also consistent with the parallel evolution of host/symbiont metabolic integration across the clade.
However, the lower values of precision were often observed in our previous works applied to other types of networks, so that we have already developed a method to remove the false-positive interactions inferred by parallel computing [ 7, 8].
Mock-treated cells were infected in parallel.
Finally, recovering a phylogenetic signal suggesting some amount of parallel cladogenesis is not sufficient to infer that parallel cladogenesis is relevant within these taxonomic groups.
All segments are connected in parallel, which infers the same VOC for across all segments.
Monte Carlo models were used in parallel to infer average numbers of peptides per cluster and distances between clusters [ 37].
The approach can feasibly be expanded to systematically measure the activity of several hundred cis-regulatory element promoter reporter variants in parallel and infer gene regulatory logic.
In parallel, we aimed to infer divergence times between species and subspecies, testing a long-standing hypothesis that argues for different time since sympatry between species as the cause of their different morphological differentiation across the archipelago.
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