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The primary mechanism inferred for this distribution is hydrodynamic sorting, as the competence of turbidity currents to transport particles reduces with distance from the sediment conduit.

The activity matrix inferred for this dataset appears in Table S3.

Because Tornieria is a relatively derived diplodocid [103], [121], it appears that the feeding behavior inferred for this taxon is an independent derivation within this lineage, rather than a retained plesiomorphic behavior.

Because scenario 1 was identified as the most probable, posterior distributions for the parameters of interest were inferred for this scenario only.

We also identified a marked peak at STR in AltDE corresponding to the fGI-8, but no function could be inferred for this GI.

As only two EACMCV sequences have been isolated on Grande Comore (one in 2008 and one in 2009) no other movement events could be inferred for this species.

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We impose a distribution of p-biases in this null model that is identical to the one inferred for the core so that this null model only differs in mean C p (and thus in the Input and Output distribution).

A novel amino acid metabolism regulon that was inferred for the first time in this work is operated by a RpiR-like regulator, termed AguR (agmatine utilization regulator), which was found to be co-localized with agmatine utilization genes in the Lactobacillaceae genomes.

This cannot be inferred for the fossils.

This is the same location inferred for the cAMP-gated channels in our previous study [9].

Joint inference of haplotypes is expected to increase accuracy of haplotypes inferred for the three populations.

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