Sentence examples for inferred copy from inspiring English sources
As a result, with the increase of the sample size, the current algorithm showed a slight but constant improvement in both the TV performance and the accuracy of inferred genotypes or inferred copy numbers (data not shown), though the values of both indices were nearly saturated.
Inferred copy numbers were then annotated with genomic features using BedTools (v. 2.17.0) [ 21].
MLPA probe copy numbers of 42 SMA patients are in Table 1 and inferred copy numbers are in Table 2.
Here, we present a package, SNPExpress, which allows concurrent interpretation of genotype, HMM inferred LOH regions, copy number, CNVs, HMM inferred copy number and gene expression data.
This approach has recently been demonstrated in algorithms such as VarScan 2 [ 7] and APOLLOH [ 8], wherein inferred copy number profiles from whole-exome sequencing alone (WES profiles) are largely concordant with profiles inferred from SNP array data (SNP profiles).
To our knowledge, no tool is currently available that allows concurrent interpretation of genotype, HMM inferred LOH regions, copy number, CNVs, HMM inferred copy number and gene expression data.
We also inferred copy-number variants (CNVs) of minimum length 1,000 bp on the basis of coverage and the presence of pseudo-heterozygous SNPs11.
We demonstrated how the joint inference procedure of inferring copy number calls, cluster assignments and profiles, coupled with adaptive feature selection, makes HMM-Mix significantly more accurate than partitioning and hierarchical clustering methods.
C.R.M., A.C.L. and S.W.S. performed the SNP6 genotyping analysis, provided a database of normal copy number variants, and the control dataset used to infer copy number in the tumour samples.
We also demonstrate a method for inferring copy number using reads generated by whole-genome bisulfite sequencing, thus enabling integrative study of epigenomic and copy number alterations.
Previous to association analysis, inferring copy number status process must be done.
