Sentence examples for inferred by using the from inspiring English sources
Figure 5 Phylogenetic placement of F. pinicola strains inferred by using the Maximum Likelihood method based on the Hasegawa-Kishino-Yano model.
The rheological structures of the lowlands (North Pole) and highlands (Solis Planum) were inferred by using the temperature profiles of each region, as calculated above.
The evolutionary history was inferred by using the Maximum Likelihood method with the default options of MEGA5, based on the Tamura-Nei model and 1000 bootstrap replications.
Figure 6 Phylogenetic placement of P. betulinus strains inferred by using the Maximum Likelihood method based on the Kimura 2-parameter model.
The phylogenetic tree was inferred by using the Neighbour-Joining method with the Maximum Composite Likelihood model in MEGA4 program with bootstrap values based on 1000 replications.
Fomes fasciatus was used as outgroup (Figure 4). Figure 4 Phylogenetic placement of F. fomentarius strains inferred by using the Maximum Likelihood method based on the Kimura 2-parameter model.
In this novel network, false positive interactions are theoretically further reduced by cutting the inter-GO connections and weighting the interactions using co-expression values, as opposed to other networks which are inferred by using only the co-expression levels [ 9] or solely literature curated networks obtained from different contexts [ 10].
The phylogenies for the concatenated nucleotide sequence datasets were inferred by using RAxML 7.2.6 with the default GTR+ Γ model for each of the nucleotide data partitions and JTT + Γ model for the amino acid alignment, the latter chosen using ProtTest v3.4 [ 81, 82].
The evolutionary history of the genes in the multiple sequence alignment was inferred by using maximum likelihood and the Tamura Nei model (Tamura and Nei 1993).
The phylogenetic tree inferred by using various Anaplasma species confirms the clustering of the strains from monkeys with A. bovis from different animals (i.e., goats, cattle, deer, ticks, wild boars, dogs, raccoons, leopard cats, eastern rock sengis, and cottontail rabbits).
The ancestral state of each SNP for the determination of derived allele frequencies (DAFs) was inferred by using Saccharomyces paradoxus as the reference outgroup.
