Sentence examples for inferred annotation from inspiring English sources
For E. coli, coverage with GO terms derived from experimental annotation was very low so Electronically Inferred Annotation (IEA) was included, only negative results (ND - No biological Data available) were excluded.
The full-length genome sequences in FASTA format are provided in the Supplementary Material, along with the inferred annotation (table of protein coding regions) based on F11 (Table S4, S5, S6, S7, S8, S9).
Taken together, these two steps generate a complete evidence trail for each inferred annotation of an extant protein.
This searches for entries that have either a direct or inferred annotation to a particular anatomical component of interest.
The location of the inferred annotation determines the possible 'phylogenetic span' of the inferred annotations, since only direct descendants of the annotated ancestral gene can inherit that annotation.
ConFunc [ 9] split the homologues into subgroups according to their annotations and then inferred annotations of the unannotated protein from these subgroups.
Confident peptide/spectrum matches were mapped onto the genome sequence, and used to infer annotation improvements.
The feature vectors of the data then taken as input to machine learning algorithms to infer annotation rules for predicting unannotated proteins [ 14].
This allows us to infer annotation terms for missing images, which is of utmost importance in scenarios where, for a given gene, data have been collected for only a subset of the stage ranges.
Typically, each protein is represented as a feature vector (e.g., textual features from MEDLINE), and the attribute features are taken as input to machine learning algorithms, such as SVM [ 2], neural networks [ 3], and random forest [ 4], to infer annotation rules for predicting the functional properties of unlabeled proteins [ 5].
GO terms are assigned to genes or gene product identifiers by biological database annotation efforts by manually extracting evidence from published experimental data, inferring annotations based on homology or via a range of computational inference methods.
