In addition, the transitive relationships among genes, TCMs and diseases could be inferred through the shared intermediates.
From a network perspective, the fate of a WGD gene pair can be inferred from the shared neighborhoods of the pair.
From knowledge of chimp behavior, biologists can plausibly infer the social behavior of the shared human-chimp ancestor, and from that reconstruct the evolutionary history of human social behavior.
In addition to providing associations between TCMs and genes by their co-occurrences, TCMGeneDIT could infer their transitive relationships through the shared intermediates, ingredients.
Two single gains in chromosome number were inferred in Succowia and at the shared ancestor between Carrichtera and Vella, while no chromosomal losses were hypothesized in the model.
The proteins associated with the shared insertion were inferred to be involved in fatty acid synthesis (3-oxoacyl [acyl-carrier protein] reductase).
We redid the analysis of Bierne et al. [ 33] again with our new samples because it allows inferring that shared polymorphism observed in our samples is either a consequence of introgression or ancestral polymorphism but not a consequence of admixture (here defined as a population composed of individuals of the two species and/or first generations hybrids).
Because, in Oxytricha, the shared, constitutive MDSs are, by definition, always single copy in the germline (and present more than once in the soma), we infer that the orthologs that share sequences in other ciliate species most likely arise from alternative MDS processing.
Using a novel decomposition method, we infer the offered shares of trade surplus from the data and find that the average share proposed to the seller amounts to about $30 \%$.
The approach of [18] relies on the information from the physical layer to infer the fair share of each node of network resources.
