Sentence examples for individually aligned from inspiring English sources

Sequences belonging to subtypes B, C, and 01_AE were individually aligned to HxB2 (using pairwise alignment functions from SeqAn (Döring et al., 2008)) to construct a summary of diversity within subtypes in HxB2 coordinates.

An example workflow for the identification of cis-regulatory TFBSs linked to a disease is outlined in the following section, and is illustrated in Figure 2. Given a set of high-throughput sequencing data from an individual, the short sequences are individually aligned to a reference human genome sequence.

For analyses that included Acorus, the Acorus genes were individually aligned with the individually extracted gene alignments from the Goremykin et al. [ 19] dataset using CLUSTALW [ 88], and the resulting gene alignments were concatenated to regenerate a matrix identical to the original except for the extra row containing Acorus.

The 13 amino acid data were concatenated as an alignment of 3819 positions after individually aligned, and then, 2520 aligned characters for 24 taxa and 2616 aligned characters for 21 taxa were retained respectively after Gblocks screening with default settings [ 70].

These gene families were individually aligned and concatenated together to give an alignment of exactly 38,000 amino acids in length.

The fixed-column constraint necessary to allow concatenation of the individually aligned sequences into a joint MSA is maintained during DP alignment using a further modification of the Needleman Wunsch algorithm.

On the one hand, the robot assistance system individually aligns itself to the employee and on the other hand, the employee gets an interface which enables him to influence certain robot positions.

We used ClustalW [ 77] for individually aligning the protein-coding genes, and further, concatenated them to create the necessary dataset for building a phylogeny.

By individually aligning these networks with the yeast interactome, we simultaneously partition the functional space of human genes, and their corresponding pathways, based on their conservation both across species and among different tissues.

All sequences were examined individually and aligned using Clustal X [ 61].

Using Sequencher (Gene Codes Inc ., each nucleotide sequence was cleaned in silico of contaminating vector or primer sequence individually by aligning the EST sequence to that of the vector and those of the primers used in the creation of the libraries (nested PCR primer 1 (5'-TCGAGCGGCCGCCCGGGCAGGT-3') and nested PCR primer 2 (5'-AGCGTGGTCGCGGCCGAGGT-3').