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Polymorphic loci sequenced with a depth greater than 10× per individual were identified using STACKS.
Subsequently, polymorphic loci sequenced with a depth greater than 10× per haploid individual were identified using STACKS and retained for further screening.
Similar(58)
Each individual was identified using a PIT (Passive Integrated Transponder) tag, and a similar number of fish from each of the 118 full sib families were placed in each tank.
In the CDS data, individuals were identified using a unique identifier constructed from sex, date of birth, last four digits of social security number, and first two characters of last name.
Duplicate and related individuals were identified using identity-by-descent, performed in PLINK using a set of 18,664 LD pruned (r2) SNPs with a minor allele frequency (MAF) >0.05.
In each BC generation, positive individuals were identified using corresponding markers, and then used for further backcrossing with the recurrent parent Jin 23B.
Closely related individuals were identified using estimation of the proportion of the genome shared identical by descent (IBD), and the relative with the lower call rate was removed.
Individuals were identified using a unique reference number and linked to all related test results.
Influential individuals were identified using the Leverage statistic and DfBeta values.
Individuals were identified using the electronic databases of the regional municipal administration registration.
Related individuals were identified using Identity-by-descent measures in PLINK (62).
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