The processing technique applied on individual data set is the same as for the candidate (Hamoudi et al. 2007) of the first WDMAM version.
However, we would argue that the choice of these density parameters is highly subjective to the individual data set as well as the user requirements.
In the present report, the SALI and SCI values were all internal to the individual data set used, resulting in different maximal SALI values.
Furthermore, the panels inside each individual data set have been reduced with IGRF/DGRF-like morels or alternatively with local polynomials; but in most cases, it is difficult to find out which model was used to reduce the data.
The value of R min was kept zero; that of R max was selected for each individual data set by successive runs with different values of this parameter to obtain the minimal discrepancy between the experimental and calculated scattering curves.
Gene trees for 18S and 28S rDNA were also obtained by running each individual data set.
From these data, it was possible to calculate the lethal dose (LD) 90, 50 and 10 concentrations for the each individual data set.
Sensitivity analyses were conducted by sequential deleting a single study each time in an attempt to identify the potential influence of the individual data set to the pooled ORs.
As expected, the integrated network surpasses any individual data set for precision at a given coverage; the complete network covers >95% of the protein-coding genes in the yeast genome with >60% precision on the inferred linkages (i.e., at least 6 out of 10 predicted linkages are true).
Burn-in was determined for the individual data set according to the sump plot.
The approved individual data set for our empirical data analysis is strictly confidential.
