The DiAlign program provides a scoring system based on local similarity of aligned blocks that indicates the alignment quality at each position.
The map to the right indicates the alignment of each individual country.
The color scale indicates the alignment coverage or presence of the lncRNAs within the corresponding genomes.
The second letter, 'm/u/N', indicates the alignment to the reference genome sequence, 'm' represents multiple alignments, 'u' represents unique alignment and 'N' represents no alignment results.
Specifically, θ p = 0° indicates the alignment of C C chains perpendicular to the articulating surfaces, while θ p = 90° indicates the alignment of C C chains parallel to the surfaces.
In contrast, the other two HMMs that allow for alignment perform much better on this clinical dataset, indicating the alignment is indeed an important issue for time series classification.
The values of NA and NC indicate the scale of the alignment.
Bracketed values at the end of the alignment indicate the number of residues in the whole channel.
The lines above the alignment indicate the locations of proposed trans-activation motifs (NI and NII) and the conserved regions in the GRAS proteins were defined previously.
Numbers on top indicate the position in the alignment, numbers on the right indicate the position in each sequence.
