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The complete data set was organized into an indexed expression directory that is accessible from a resource database, and here we present selected examples of biological questions that can be addressed with this comprehensive and powerful gene expression data set.
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We found that a reminder shock decreased IL and ventral ITC activity and increased CeM activity as indexed by c-Fos expression.
The model (1) can thus be simplified as, μ TBf = V 1f μ TMf = V 2f + S f μ TTf = (V 1f + V 2f )/2 μ TSf = (V 1f + V 2f )/2 + S f where μ TBf, μ TMf, μ TTf and μ TSf represent expected expression levels indexed as appropriate to the four treatments TB, TM, TT and TS for feature f.
We reviewed hundreds of MEDLINE-indexed papers involving gene expression data analysis, which were published between 2003 and 2005.
The reads from each sample were indexed for use in preliminary expression analyses and represent between 47 and 79 million reads per sample (Table 1).
A 2007 survey of ten of the top economic journals finds that only 5.8% of the articles published in 2003 and 2004 both lacked statistical analysis of data and lacked displayed mathematical expressions that were indexed with numbers at the margin of the page.
Furthermore, whether adult males and females differ in their responsiveness to a social interaction in terms of neuronal activation indexed via immediate early gene (IEG) expression remains to be determined.
Some fields including the species, GH family, EC number and the expression system are also indexed to improve search results.
Difference in expression levels for the indexed values of pooled VRGs, was assessed by paired Student's t-test, p < 0.05; between target and control groups in qPCR.
Further, we also adopted another reference cell cycle gene expression data for yeast indexed by GSE7645 to alleviate the bias of expression in the calculation of mean and variance for each gene.
The annotations are then used to count the number of reads that align to each exon from the indexed alignment file, which is used to calculate expression on a per-gene level.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com