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To this end, index of alignment degree (IAD) was put forward to try out in the engineering application of transfer alignment accuracy evaluation and identification.
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The FM-index of alignment is an FM-index of this suffix array of alignment.
We implemented the FM-index of alignment and did experiments on 100 genome sequences from the 1000 Genomes Project.
In this paper we propose the FM-index of alignment with gaps, a realistic index for similar strings, which allows gaps in their alignment.
In this paper we propose the FM-index of alignment, a compressed index for similar strings with the functionalities of pattern search and random access.
Recently a compressed index for similar strings, called the FM-index of alignment (FMA), has been proposed with the functionalities of pattern search and random access.
The FM-index of alignment supports the LF-mapping and backward search, the key functionalities of the FM-index, but the LF-mapping and backward search of our index is significantly more involved than the original FM-index.
A particularly noticeable improvement is seen in the Similarity Index scores of alignments generated by LOCK2 (from 8.35 to 5.69).
The results of our study suggest that indices of patellar alignment can be measured easily on a standard knee MRI.
Nonetheless, the relationship between these indices of patella alignment and congruity and anterior knee pain has not been widely examined.
Results of our study clearly suggest the association between indices of patellar alignment and such features of patello-femoral OA as osteophytosis and joint space narrowing.
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