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It uses suffix array index for read alignment which is generated using distributed index generation algorithm.
We have developed a process (and a related software suite), shown in Figure 8, for informational index generation and analysis.
Due to distributed index generation algorithm, index generation time is very less.
Fig. 9 Index generation time for StreamAligner and SparkBWA.
Fig. 4 Mapreduce architecture for Phase II (suffix index generation).
Fig. 3 Lineage graph for Phase II (suffix index generation).
The trapdoor is encrypted by unchangeable index generation key ik.
Currently, BWA is one of the best index generation tools.
Figure 4 shows an example of the index generation step.
Results show that index generation algorithm is highly scalable.
In "Index generation and ranking" section, we described our indexing structures and generation algorithm in Map-Reduce.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com