Sentence examples for independently aligned from inspiring English sources

The two tilt series were first independently aligned using marker-free alignment [93] and then merged by patch correlation and volume warp using IMOD [94] to produce the raw, dual axis tomogram.

MglA, MglB, and Rup homologs that were 150 240 aa were independently aligned using MAFFT, then the core region of the alignments corresponding to the following residue ranges were extracted for phylogenetic analyses: 14 189 of MglA from M yx.

Reads were independently aligned to the S.erythraea genome using multiple software to assess for possible alignment bias caused by the high GC content of the genome.

Sequences of each gene were independently aligned using the Muscle algorithm under default parameters [ 36] and the alignments inspected by eye for any obvious misalignments that were then corrected.

The later temple B was built directly over the walls of Temple A and it is likely that it was built around the physical remains rather than being independently aligned.

COI and wsp genes were independently aligned (MUSCLE algorithm).

THF builds on Tophat to align RNA-seq reads using Bowtie [ 16] without using any annotation to independently align paired end reads, followed by segment mapping of unaligned reads that are used together for identifying candidate fusion junctions.

In the CQ method, genomic DNA from males and females is sequenced independently and aligned to candidate reference sequences.

SNPs were also called independently by aligning the de novo assembly of each strain with the Muguga genome using MUMmer, which were filtered using the following rules: 1) supported by at least six non-duplicate reads; 2) had consensus quality score of 30 or above; 3) flanking regions (15 bp up and downstream) had less than 20% of bases whose consensus quality scores were less than 30.

Eleven sets of COGs were aligned independently using the ClustalX alignment program, then the alignments were concatenated into a single alignment and a neighbor-joining (NJ) tree was constructed using MEGA version 4. Gene gain and loss events were processed with PAML software package and assigned to branches in the phylogenetic tree [ 57].

The goal of this algorithm is to find sets of genes that would have very similar alignments if they were aligned independently.