Sentence examples similar to incorporating multiple alignments from inspiring English sources

The new method utilizes known LRR structures to recognize and align new LRR motifs in TLRs and incorporates multiple sequence alignments and secondary structure predictions.

Probcons [ 7] and Probalign [ 8] use a probabilistic consistency transformation step to incorporate multiple sequence conservation information during pairwise alignment, thus providing information that can be used to guide the progressive alignment.

This may be due to the probabilistic consistency-based objective function used in Probcons, which incorporates multiple sequence conservation information during the alignment of pairs of sequences.

Our new pipeline consists of multiple alignments that incorporate all known genetic variants into a genomic model followed by annotation and merging.

Also note that the UCSC alignments are extracted from multiple alignments of many species, thus incorporating additional information that was not available to our alignments based on the SFF model.

Finally, the sequence gaps were removed from the multiple alignments, and we used the DNA statistics package (from BioPerl, http://www.bioperl.org/, last accessed June 8 , 2015, incorporating the Nei Gojobori method and the Jukes Cantor model of nucleotide substitutions, to calculate the Ka and Ks of the multiple alignments.

Detecting the limits of regulatory element conservation and divergence estimation using multiple pairwise and multiple alignments.

Multiple alignments of cereal OsBEIIa proteins.

Multiple alignments were constructed using ClustalW2 program.

Multiple alignments were performed using ClustalX [30].

Clustalx1.83 was used to construct multiple alignments.