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Furthermore, we plan to incorporate an absolute time scale of activity by incorporating divergence data of elements.
This approach has the advantage of explicitly incorporating divergence and demographic processes, which can otherwise confound assessment of selection.
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Large and well-resolved phylogenies that incorporate divergence times provide powerful tests of a wide range of hypotheses whilst accounting for the effects of shared evolutionary history [ 13, 15].
Incorporating available divergence time information.
In the second approach the so-called perfectly hyperbolic form of Maxwell equations are used which explicitly incorporate the divergence equations into the time stepping scheme.
These fossils have prior to the present study not been incorporated in divergence time estimates.
The sampling priors for fossil calibrations were set to be normally distributed, incorporating knowledge on divergence estimates, such as the earliest appearance of members of a clade in the fossil record as well as the age of an assumed monophyletic origin and early relatives of the clade.
Moreover, we incorporate K-L divergence into an ambiguous set of uncertain parameters to measure the value of data.
The contribution of Ds1 exonization for gene divergence is incorporating the intron sequences with different reading frame patterns to enrich the plant proteome.
This simple comparison suggests that managed gene flow disproportionally increased N b in the integrated line and reduced genetic divergence by incorporating the naturally spawning segment of the population.
Recently, phylogenetic studies in Macaronesian plants have started incorporating information on lineage divergence times [ 3, 10, 11], a key factor when addressing evolutionary questions on the processes underlying lineage diversification [ 12] and their role in community assembly [ 13].
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