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Iterated HMM is shown to be able to build a more diverse and potentially more sensitive models than regular HMM, by incorporating distant homologous sequences while avoiding the contamination of non-homologous sequences into the model [ 62], and thus iterative HMM has been frequently utilized in bioinformatics and computational biology [ 63- 66].
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Using the residual information, we can incorporate the distant information provided the offline approximation satisfies certain properties.
To incorporate more evolutionarily distant relationships and connect genes in singleton groups to more distantly related homologs, unconnected genes were assigned to the module containing the gene with the most similar protein sequence if its best match exceeded a less stringent cutoff of 10−10 and coverage of at least 50%.
A new antitoxin gene is incorporated from a distant source accompanied by the loss of the previous antitoxin gene by xenologous displacement (Omelchenko et al. 2003).
The St. Matthew Passion setting of Thomas Selle (1599 1663) uses a double chorus extensively, while his setting of the St . John Passionincorporates instruments and a "distant choir".
The emerging view begins to incorporate transcription activation by distant enhancers with large scale nuclear architecture and subnuclear movement.
As the ingroup topology may depend upon the choice of a single outgroup, Zea mays and Oryza sativa were also incorporated as additional, more distant outgroups.
Although some enhancers are found in the proximity of the transcription start sites of their target gene, there is mounting evidence of distant enhancers incorporated into the structure of neighboring genes or looping over intermediate unaffected genes (Irimia et al. 2012; Lettice et al. 2003; Perry et al. 2010; Visser et al. 2012).
This will make it obvious who the main subject is within the frame whereas permitting you to incorporate the immediate and distant atmosphere.
In all three cases we can see why using typed dependencies has improved the classification outcome by identifying features that a BOW or hateful terms model would not identify, and incorporating co-occurring but often distant terms (2 or 3 words apart with different terms inbetween).
Specifically, we found that sequences close to the site of URA3 insertion are incorporated at very high efficiencies, but sequences increasingly distant from URA3 are incorporated at progressively lower efficiencies.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com