Exact(1)
In addition to the homeodomain, 5' and 3' flanking regions were incorporated in the alignment, including the PBX domain when present (see Additional file 1: Table S1).
Similar(59)
The hypothesized single nucleotide deletion in the C-terminus of eu AP3 lineage members was incorporated into the alignment (see Additional file 3 for complete alignment in NEXUS format).
The increase in the alignment rates shows that extra information was incorporated in the pseudo-molecule sequences by modifying the SNP and InDel sites.
We have now incorporated in the text a discussion of the use of alignment-free methods for detecting lateral genetic transfer and for classifying metagenomic data, to highlight further the power of alignment-free approaches.
Multiple sequence alignment was carried out in ClustalW [ 22] incorporated in the freeware Computational Evolutionary Biology package MEGA version 5.2.1.
Instead, it is incorporated in the Cayman Islands.
This was incorporated in the BCRW simulations.
Finally, the massive use of ChIp-Chip data makes it possible to reveal important protein/DNA interaction, thus allowing the enrichment of genomic data with functional data, an extra layer of information that could certainly be incorporated in sequence alignment strategies such as the ones we report here.
The combination will be incorporated in the Netherlands.
They will eventually be incorporated in β-crystals in the absence of non-proline containing spidroins, although the overall energy costs will be higher to stretch the molecules for perfect parallel alignment.
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