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During the identification phase, the density factor for the k-nearest neighbours of an observation is adapted to compute its inconsistency score.
We would like to thank Pere Puigbo for providing the inconsistency score data.
This justifies the first inequality because any n-parsimonious scenario cannot have a higher inconsistency score.
(2) We have extended the GIMME approach by moving from the inconsistency score to the inconsistency vector that contains the various contributions to the metabolic inconsistency.
The independence assumption minimally affects the total inconsistency score of the parsimonious scenario: for g = 1, only 19 COGs had greater inconsistency scores under this assumption than without it and in each case the difference in the score was 1.
Obviously, the total inconsistency score also substantially increased at higher gain penalties, whereas the average number of scenarios per COG went down with the increase in the gain penalty.
Similar(52)
All inconsistency scores were taken from [ 22].
Author's response: We have added an analysis of the inconsistency scores for the highly abundant proteins.
We mapped the tree inconsistency scores (ISs) for all trees from the forest of life in [ 22] to these datasets to test our proposal that abundance is a barrier to HGT.
Since we are measuring inconsistency, we score 1 if the condition is false, 0 otherwise.
In this study, the inconsistency in scoring between observers was mainly attributable to differences over one class, score 2, 'small sore or wound', and this inconsistency may have been exacerbated by discussions around a different type of tail damage, not caused by tail biting.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com