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For the LTR-retrotransposon phylogenetic analyses, 50 complete consensus sequences and 10 incomplete consensus sequences that corresponded to nearly complete ORFs of polyproteins were used.
In addition, a longer list of mutations increases power when searching for the enrichment of mutations in genes or pathways [ 16], and thus in such situations it may be better to consider variants with incomplete consensus.
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It is generally thought that the poem is incomplete, though that consensus is still hotly disputed.
Apparently, this was caused by an inaccurate or incomplete definition of consensus sequences by RepeatScout.
To validate this proposal, a multi-criteria decision method, allowing subjectivity, uncertainty, incomplete judgments and group consensus is then performed, based on a case study which shows the flexibility of fuzzy analytical hierarchy process for such assessment.
Although the knowledge of their biological role is incomplete, there is a consensus that these cells perform excretion/secretion activities.
Nevertheless, we did retrieve a few instances that had passed through our parsing strategy, apparently because of an inaccurate or incomplete definition of the consensus produced by RepeatScout.
We also observed that many flank tags hit multiple locations in the genome, which may result from segmental duplications, reference genome misassemblies, or incomplete definition of the consensus TE query sequence.
First, both of the putative promoters found upstream of the claR gene show incomplete correlation with the consensus sites for both −10 and −35 sequences, and thus may drive a low level transcription.
Figure 9 Steady-state performance of the distributed tracking with consensus algorithm for incomplete data and noiseless communication case.
Third, to show that this method is applicable in large scale we use it to transfer DNA-binding specificity data between TFs to enrich the as yet incomplete annotation of DNA binding consensus motifs of TFs.
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