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A data compendium was generated using Affymetrix expression profiles of 341 arrays from 85 Caco-2 exposure experiments (Table 2).
Overcoming exclusion begins with inclusive data.
Expression profiles from the TCGA were processed as described for 'Level 3 data' in the TCGA data compendium (2011 Cancer Genome Atlas Network).
Each network reweights the genomic data compendium to yield predictions tailored to an individual biological context of interest.
The analysis of gene expression data compendium provided information on the nucleoid organisation in circular double stranded DNA bacteria.
The S. cerevisiae microarray data compendium [ 10] contains expression profiles for 6153 genes in 173 different stress conditions.
For each trial, we used the most updated or most inclusive data.
The most updated or inclusive data for each study were used for abstraction.
Our findings were reproduced using two independent data compendiums, suggesting that these observations reflect true biological relationships.
A large multi data set compendium consisting of 165 diverse data sets (see Additional file 3: Table S3) was used to generate an accurate representation of gene expression.
To help researchers sort through the maze of biomarker data, a compendium of ∼2500 published candidate biomarkers in PDA was compiled (PLoS Med, 2009.
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