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This digital inclusion list is part of our Beveridge Revisited project that looks back at the inception of the welfare state and forward at its future.
Investigators concerned with these types of molecules may therefore wish to incorporate these masses in the inclusion list.
Given the small number of hmdb compounds with high mass defects, we also incorporated an "inclusion list" into our model (Additional file 2: Table S2).
Features in experimental datasets with the same m/z as compounds in this inclusion list (within a pre-set error range) will be retained; ensuring known endogenous compounds are not removed with salt clusters.
This inclusion list contains all the masses from 590.5 to 939.5 with 1 Da intervals.
Where there was indecision, the three authors discussed each article to ascertain the final inclusion list.
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These mass lists were entered as inclusion lists to the Information Dependent Acquisition of the QSTAR instrument (to be selected for MS/MS) in subsequent runs.
To identify a tagged-peptide's sequence, we performed an inclusion list-driven shotgun proteomics experiment where peptides bearing a recoded mass envelope were targeted for fragmentation, allowing for direct site mapping.
For inclusion in list criteria were Mascot score higher than 100 and sequence coverage over 10%.
These peptides were isolated using a time-scheduled inclusion mass list (Loevenich et al., 2009).
The benefits of this go way beyond inclusion on lists of top CEOs or best employers.
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