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If you compare the results of the index to other companies in our industry, you will find that our inclusion level for employees is quite high.
Lee et al. (2015a) suggested that 0.4% (dry matter basis) is the optimum dietary inclusion level for yellow loess (YL) in the diet of rainbow trout.
An alternative quantity (in the place of rescaled RPKM) is the inclusion level for an (TE) exon of interest.
The inclusion level for each alternative sequence and sample was determined as previously described (Ellis et al. 2012).
In addition, H4K20me1_mid also had positive correlation coefficients to CE inclusion level for all three cell lines, while H4K20me1_down and H3K9me3_down showed negative correlation.
Six comparisons were made between any two of the four stages to test if there were 5% or more change of the exon inclusion level for exon skipping events, and the events with false discovery rate (FDR) of <0.1 were determined as significant changes between the two stages.
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Inclusion levels for alternatively spliced exons in two different tissues (brain cortex and heart) for human and chimp were obtained from the supplemental materials of Calarco et al.'s [15]; http://www.utoronto.ca/intron/Hs_vs_Pt.html).utoronto.ca/intron/Hs_vs_Pt.html
Consistent with the RT-PCR results, RNA-seq data from the adult brain showed high inclusion levels for both exons 6 and 11 (96 and 69 %, respectively).
In Figures 5a and 5b we have plotted the variation of the dS and dN with the inclusion levels for the alternative exons split into CES and non-CES exons.
(c) Bubble plot showing the alterations in the inclusion levels of a retained intron for Celf1 across various developmental stages.
At that, an exon is more likely to be lost in the mouse genome than in the dog genome: the number of exons common for human and dog, but not mouse is about twice larger than the number of human-mouse- not-dog) exons for all inclusion levels of bothuman-mouse- not-dognd frame-shuman-mouse- not-dog
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CEO of Professional Science Editing for Scientists @ prosciediting.com