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The laser link experiment, which includes alignment measurement of the telescopes, has proven to be an excellent method to confirm the performance of laser altimeters before they arrive at their target bodies, especially for deep space missions.
The alignment between two CMAP files is stored as an XMAP file that includes alignment coordinates and an alignment confidence score (Fig. 1(10)).
This workflow includes: alignment using BWA mem [ 12], duplicate removal using Picard MarkDuplicates [ 13], Indel realignment using the GATK IndelRealigner, base quality score recalibration using the GATK BaseRecalibrator and variant calling using the GATK HaplotypeCaller.
The SNP detection algorithms implemented in the Mosaik+GigaBayes and CLC Genomics Workbench pipelines are Bayesian and Neighbourhood Quality Standard respectively, but neither of them includes alignment mapping quality in the model.
Unbiased searching and support for multiple output formats: by default, ABMapper will provide as much useful information as possible, which includes alignment details, splicing junction sites and repetitive reads.
This file includes alignment contigs for each of the 73,473 assembled transcripts and all of the sequencing reads that align to each transcript, therefore it encompasses all of the genetic variation in the pooled sample.
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We include alignment length, unaligned length and alignment coverage for both aligned sequences as new clustering parameters into the current CD-HIT.
Again, some of tools include alignment approaches with an effect similar to this filter by aligning reads to the transcriptome.
WES analysis including alignment, post-alignment processing, and variant calling from WES data was performed as described previously44.
Region and industry are among the most germane external factors to keep in mind; critical internal considerations include alignment with strategy, leadership, and organizational design.
Participation supporting factors include alignment of management priorities, opportunity for payment/compensation, effective engagement via information workshops and site visits, and clear and uncomplicated bidding and contracting experiences.
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