Sentence examples for inaccurate assembly from inspiring English sources

It is also possible that the discrepancy is caused by inaccurate assembly of repetitive sequences of the sugarcane BACs generated by 454 Flex.

That being said, we do expect a false discovery rate of 10-15% in our list of ∼90,000 predicted sites, and these thousands of false-positives are probably due to inaccurate assembly, SNPs, somatic mutations and misalignments. 1) The de novo transcriptome assembly is a very trivial computational issue.

In addition to in silico predicted several extra-chromosomes were positive for TR by in situ analysis, potentially indicating inaccurate genome assembly of the heterochromatic genome regions.

The first group comprises the technical issues such as low quality of raw data, contamination by genomic DNA, inaccurate contig assembly and wrong choice of search parameters (e.g. too stringent e-value cut-off).

Amplification artifacts that occur during high-throughput library preparation can make de novo assemblies inaccurate (Kozarewa et al. 2009), so we used the CLC Genomics Workbench Duplicate Reads Removal Plugin to remove them.

Gordon et al. [ 36] showed that the WUGSC2.1/galGal3 chicken sequence assembly was rather inaccurate for GGA28, and we believe the same to be true for GGA25.

A very recent additional improvement to the IDBA system for metagenomes is IDBA-UD that addresses the problem of uneven distribution of the reads by iteratively removing short inaccurate contigs and performing local assembly to fill gaps.

Combining reads from both genotypes could potentially complicate the assembly process and create inaccurate transcripts.

However, there is often no warning of these limitations when such tools are misused and an output, however inaccurate, is often generated, so any assembly resulting for such non-cancer tools should be taken with caution.

Such errors could arise from poor genome assembly of repeat sequences, inaccurate estimation of terminal branch lengths, or gene conversion events across dispersed repeat sequences that erase age information.

Pinot Noir [ 30, 31] due to significant gaps in current assemblies and the potential for inaccurate automated gene predictions.