Sentence examples for in the true alignment from inspiring English sources

For each pairwise LCB in the true alignment, we record a TP LCB prediction when the predicted alignment contains at least one correctly aligned nucleotide pair in that LCB.

Recall that the column is a pair (a i, b i ), and it is considered correct, if the same column also occurs somewhere in the true alignment.

This is reflected in the true alignment for both nucleotide and amino acid sequences with the variation in the intensity of violet for external, middle, and root branches.

Of course, when we apply the Z-best strategy, we could miss a seed contained in the true alignment when a false match has a higher score.

A repeat block is considered correct, if exactly the same region in X and the same region in Y are also forming a repeat block in the true alignment.

By generating sets of shuffled alignments in this way, we can thus calculate the probability that the conservation of RNA secondary structure in the true alignment is exceptionally strong.

In addition, if the true alignment is long and contains many seeds, the chance of all seeds being false is very small.

Landan and Graur [ 30] have shown that reversing the direction of the sequences before an alignment is made can result in quite different trees from the unreversed alignment if the true alignment is ambiguous.

We will consider a variant of the posterior decoding, in which alignment columns are annotated by the repeat annotation, and an alignment column gets a gain +1, if the true alignment contains the same column with the same label.

In both cases, the soft-clipped local alignment represents the "true" alignment, but the aligner has no way of knowing the location of the SV breakpoint, and thus will instead force a mismatched global alignment or leave the read unmapped.

The sum-of-pairs score (SPS) is the proportion of aligned pairs of nucleotides/amino-acids from the true alignment that are also aligned together in the test alignment.