Ten clusters of these characteristics were isolated in the subnetwork of proteins with positive correlation with the SUV and 16 clusters in the subnetwork of those with negative correlation.
We show information about the type of economic sectors present in the subnetwork of bidirectional links and about the over-expression of some of them in Figure 7.
Results are shown in Figs. 1 and 2. Node diameters are proportional to their degree in the subnetwork, and edge width is proportionate to the log of the bandwidth associated with that edge.
We also use the information of the types of kinship to measure the average coefficient of relationship ((langle rrangle)) by summing over all the assumed genetic relatednesses (r) [26, 27] for all the links in a given subnetwork and then dividing by the total number of links in the subnetwork.
In [6], a protocol is proposed which, given a communication network, computes a sub-network such that, for every pair of nodes connected in the original network, there is a minimum-energy path and in the subnetwork where a minimum-energy path is the one that allows messages to be transmitted with a minimum use of energy.
Therefore, the genes in the subnetwork are more possibly pathogenic genes.
Note that a highly interconnected subnetwork does not mean that the genes in the subnetwork are significantly differentially expressed.
The genes in the subnetwork are further required to be differentially expressed before and after the invasion of the pathogenic fungus.
Therefore, the candidate genes in the subnetwork are expected to be involved in the same biological processes as seed genes, which imply that they are potential pathogenic genes.
Therefore, the candidate genes in the subnetwork are expected to be involved in the same biological processes as seed genes, and thereby may be pathogenic genes.
A pathogenic subnetwork was then extracted by integrating differentially expressed genes and protein-protein interaction network, where the genes in the subnetwork are differentially expressed and interact with known pathogenic genes.
