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The proteins in the pairs with the same best hit were aligned to the matching proteins in UniProt by stretcher in EMBOSS [ 23].
If a merged gene in annotVer 2.0 and more than two of its counterparts in annotVer 1.0 had the same best hit, the merged event was regarded to be optimal.
We performed an all-against-all self-comparison of proteins encoded in the Salmonella genome and detected all groups of genes that could be assigned as homologs in the Salmonella genome that share the same best hit in the E. coli K12 genome (Additional file 3).
Then, we defined in-paralogs as sequences that were similar to each other and shared the same best hit in another genome (see "Methods").
Each of these jackknifed datasets was run in BEAST, as described above, with the same best-fitting priors from the full dataset.
Each of these n-1 datasets was then run in BEAST, as described above with the same best-fitting priors from the full dataset.
The team table tennis competition is played in the same best-of-five format as Davis Cup in tennis: two singles matches, then a doubles match, then two more singles matches, with the first team to win three matches winning.
Dressed in utility tweeds, they are captured in the same movement, best feet forward, wielding their tin cans like ration-book trophies.
And, like moles, they start tunneling but not in the same or best direction.
The Heat — who wobbled through the opening weeks of the season while tinkering with their offense and rotation — are 27-8 in the same period, the best mark in the league.
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