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Window functions are introduced in the "Linear Ion Drift Model" section [3].
Full MS scan was detected in the Orbitrap, and the MS/MS scans were detected in the linear ion trap and Orbitrap.
Precursor ions were isolated and subjected to CID in the linear ion trap.
The six most intense ions were sequentially isolated for fragmentation and detection in the linear ion trap.
Up to 5 most intense multiply charged ions (2+, 3+ or 4+) per scan were CID fragmented in the linear ion trap.
The six most intense ions of a full MS acquired in the orbitrap analyzer were fragmented and analyzed in the linear ion trap.
Using the MALDI Orbitrap ion isolation and collisional dissociation were achieved in the linear ion trap, and both precursor and product ions were detected in the Orbitrap.
Precursor masses were collected at high resolution; MS/MS spectra were triggered for the ten most abundant ions and acquired in the linear ion trap.
The 20 most intense ions were sequentially isolated for fragmentation in the linear ion trap using collision-induced dissociation (normalized collision energy = 35%, activation Q = 0.250 and activation time = 10 ms) in the Velos LTQ.
Samples were analyzed in a data-dependent mode fragmenting the three most intense ions in the linear ion trap by low-energy CID and accurately performing in parallel mass measurements in the FTICR cell.
The mass spectrometer was operated in a data-dependent mode where the three most intense ions detected in each MS scan were selected for tandem MS (MS/MS) in the linear ion trap.
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