Sentence examples for in the duplication model from inspiring English sources

In the duplication model, at each iteration, we randomly pick a vertex to duplicate with probability proportional to its degree and randomly drop the duplicated edges with probability at 0.5 in order to t the degree distributions and sparsity of biological networks.

In the duplication model the duplication of the information is considered as a dominant evolutionary force for the growth of a network, such as in many biological networks.

Although it is possible to make the general distribution of subgraphs in an artificial model (more specifically the duplication model) very similar to that of a specific PPI network, there are a number of subgraphs, for example, in the Yeast PPI network, which occur much more frequently than that in the associated artificial model.

For the second, we used the duplication model (DM) [ 37], which, in contrast to the PAM, generates graphs containing several dense clusters.

The data sets simulated under the static model were also evaluated under the duplication model, and the difference between the maximum likelihoods under each model for each data set were compared with our data set in order to confirm that the duplication model was a significantly better fit for the data.

In order to show that our data are better explained by including WGDs, we compared the static model to a "duplication" model in which δ is allowed to take values greater than 0. It is possible that the superior fit of the duplication model is a consequence of a strong tendency for the number of chromosomes to increase rather than to paleopolyploidy events.

We found no difference between WT and R111G Tg mice in any of these behaviors, indicating that an intact MBD is necessary to elicit the toxicity seen in the duplication syndrome model.

In the duplication-divergence model, neofunctionalization and subfunctionalization are modeled as a random attachment of new links [ 20] and a random loss of links to duplicated nodes [ 22], respectively.

In the duplication-divergence model one would not expect length-dependence over time, since long and short genes should be equally likely subject to duplication at any time level.

In the duplication-divergence model, on the other hand, one would not expect a time dependency of exon numbers, since this mechanism should work the same at every time horizon.

In spite of the computational difficulty, it is still interesting to incorporate the multiple copy duplication model in map alignment, eventually through heuristic algorithms.