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Exact(15)
The log2-transformed expression data were used in the downstream analyses.
Only read ends that make unique concordant pairs are used in the downstream analyses.
To avoid paralog genes in the downstream analyses, these loci were excluded.
In addition, as seen in the downstream analyses, illness conditions and medical expense are associated with multiple demographic and other factors.
Genes with similar copy number estimates in both CGH and resequencing across genotypes were considered "cross-validated" and were included in the downstream analyses.
After filtering the redundant orthologs that may result from alternative splicing, 7,069 pairs of unique orthologs were finally identified and used in the downstream analyses.
Similar(45)
Both of the procedures performed [16], [32] turned out comparable in all the downstream analyses.
In house scripts written in Perl were used for the downstream analyses of the obtained SNP lists as well as for making the coverage plots.
BWA outputs alignment in the SAM format to take the advantage of the downstream analyses implemented in SAMtools.
This tendency leads to systematic errors of the downstream analyses in phylogenetic pipelines, including overestimation of substitution and deletion events.
Combining our workflow with the study of amplification efficiency offers the chance for researchers to evaluate enormous amounts of NGS-generated data in great detail, improving confidence over the downstream analyses and subsequent applications.
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